species:   Cocin
pid:       PID1267
parent:    cci-milR-14
paralog:   
locus:     scaffold_104:30952-31038
matures:   ['UGGAGAUGGUAGCAACCGGA', 'CUCUUGCUGCUUCUUCGCC']
srr:       SRR9972092
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972092.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972092.cram scaffold_104:30952-31038

1 out of bounds
1 alignments
1 proper strand
1 stranded perfect matches

*********************                                             ******************** 
UUGGAGAUGGUAGCAACCGGAGUAGUUGGCGUGAAGCUGCUGGCGGAGCGGCUGCGCGCUUCUUCCUCCUCUUGCUGCUUCUUCGCC
.((((((.((((((((..((((.((..((((((.(((((((.....))))))).)))))).))..))))..))))))))))))))..
-UGGAGAUGGUAGCAACCGGA------------------------------------------------------------------ l=20 a=0 c
--------------------------------------------------------------------CUCUUGCUGCUUCUUCGCC l=19 a=0 c*
UUGGAGAUGGUAGCAACCGGA------------------------------------------------------------------ l=21 a=1 ma
--------------------------------------------------------------------CUCUUGCUGCUUCUUCGC- l=18 a=0 ma*

UUGGAGAUGGUAGCAACCGGA------------------------------------------------------------------ l=21 a=1 (ma)

mb-01011
ax-1011111
ku-01
ss-110111111110
fn-011
